MAG Assembly — Human Gut Shotgun Metagenome

nf-core/mag (MEGAHIT) · real public ENA data · run on the self-hosted SeqDesk runner

Assembly summary

503

contigs (≥ 1 kb)

1.95 Mb

total length

6,158 bp

N50

Assembler	MEGAHIT (nf-core/mag)
Total contigs (≥ 1 kb)	503
Total assembled length	1,954,373 bp
Longest contig	84,864 bp
Shortest contig	1,006 bp
Mean contig length	3,885 bp
N50	6,158 bp

Input

Study	Human Gut Shotgun Metagenomes (Demo)
Sample	HGM-01 · human faecal shotgun metagenome
Sequencing	Illumina NextSeq 550 · paired-end WGS
Source	Demonstration dataset (illustrative)

ENA submission illustrative (demo)

In a real run, SeqDesk submits the reads and assembly to the ENA test server (wwwdev.ebi.ac.uk) via submg/Webin-CLI and records the returned project / sample / run / assembly accessions here. This is a demonstration study, so the accessions shown are illustrative placeholders, not real ENA registrations.

Demonstration data — the presentation and accessions are illustrative. Assembly produced by the MAG pipeline on the self-hosted runner; the assembled bases and statistics above are genuine MEGAHIT output.